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Monday, December 01, 2014

Biological Informatics 

[Download Biological Informatics White Paper Link Compilation]

NOTE: For the latest updates and resources please visit the following new site: http://www.BiologicalInformatics.info/.

BiologicalInformatics.info is a Subject Tracer™ Information Blog developed and created by the Virtual Private Library™. It is designed to bring together the latest resources and sources on an ongoing basis from the Internet for biological informatics (health informatics, neuroinformatics, biodiversity informatics and biomolecular informatics) which are listed below. We always welcome suggestions of additional sites and resources to be added to this comprehensive listing and please submit by clicking here. This site has been developed and maintained by Marcus P. Zillman, M.S., A.M.H.A.; Internet expert, author, keynote speaker, and consultant. His latest white papers include Searching the Internet, Academic and Scholar Search Engines and Sources, and Knowledge Discovery Resources 2014. All of his Subject Tracer™ Information Blogs and his white papers are available from WhitePapers.us.

His latest monthly column is available by clicking here. Subscribe to his free monthly Awareness Watch™ Newsletter. Learn more by clicking here.

The Biological Informatics Subject Tracer™ Information Blog was listed number two in the Top 50 Health Informatics Blogs. See the entire list by clicking here.

The Biological Informatics Subject Tracer™ Information Blog was named a Top 50 Continuing Medical Education Blog. See the entire list by clicking here.


This Biological Informatics Subject Tracer Information Blog is divided into the following categories:

BIOLOGICAL INFORMATICS
HEALTH INFORMATICS (Medical Informatics)
NEUROINFORMATICS (NI)
BIODIVERSITY INFORMATICS (BDI)
BIOMOLECULAR INFORMATICS (BioInformatics)
Current Subject Tracer™ Information Blogs


BIOLOGICAL INFORMATICS

1000 Genomes - A Deep Catalog of Human Genetic Variation
http://www.1000genomes.org/

2CAN Bioinformatics Support Portal
http://www.ebi.ac.uk/2can/home.html

Academic and Scholar Search Engines and Sources
http://www.ScholarSearchEngines.com/

Access: The Official Newsletter of the National Biological Information Infrastructure
http://publications.nbii.gov/portal/community/Communities/Toolkit/NBII_Publications_Library/Access_Newsletter/

Acronyms Related to Biological Informatics and Biodiversity
http://www.iabin-us.org/glossary_acronyms/gloss_acronym_index.html

A Genetic Atlas of Human Admixture History
http://admixturemap.paintmychromosomes.com/

Agriculture and Biology Journal of North America (ABJNA)
http://scihub.org/ABJNA/index.html

BeeSpace - An Environment for Analyzing Nature and Nurture in Societal Roles
http://www.beespace.illinois.edu/

BEN
http://www.biosciednet.org/portal

Biocomplexity Thesaurus
http://thesaurus.nbii.gov/

BioEd Online - Biology Teacher Resources from Baylor College of Medicine
http://www.bioedonline.org/

BioethicsWeb
http://bioethicsweb.ac.uk/

Biohealthmatics.com - The Biomedical Informatics Career Portal
http://www.biohealthmatics.com/

Bioinfo Online
http://www.bioinfo-online.net/

Bioinformatics: A Brief Review of Resources On the Web by Tina O'Grady
http://snipurl.com/hmgdv

Bioinformatics Journal
http://bioinformatics.oxfordjournals.org/

Bioinformatics Organization
http://bioinformatics.org/

Bioinformation
http://www.bioinformation.net/

BioIntelligence
http://iit-iti.nrc-cnrc.gc.ca/projects-projets/biointelligence_e.html

Bioline International
http://www.bioline.org.br/

Biological and Chemical Terrorism Information for Healthcare Professionals
http://www.istl.org/04-winter/internet.html

Biological Journals and Abbreviations
http://home.ncifcrf.gov/research/bja/

Biology and Medicine
http://www.biolmedonline.com/

Biology News Net
http://www.biologynews.net/

Biomat.net - The Biomaterials Network
http://www.biomat.net/

Biomechanics and Modeling in Mechanobiology
http://www.springer.com/engineering/journal/10237

Biomechanics Knowledge Repository
http://www.biomch-w.org/wiki/index.php/Main_Page

BioMedExperts - Your Scientific Match Point
http://www.biomedexperts.com/

Biomedical Digital Libraries [Open Access]
http://www.bio-diglib.com/home/

BIOS - Biological Innovation for Open Society
http://www.bios.net/

Biosharing

http://www.biosharing.org/

BioText Search Engine
http://biosearch.berkeley.edu/

BioTools
http://www.bioscience.org/urllists/bioltool.htm

Briefings in Bioinformatics
http://bib.oxfordjournals.org/

caBIG™ - cancer Biomedical Informatics Grid
https://cabig.nci.nih.gov/workspaces/Architecture/caGrid/

Centre for Agricultural Bioscience International (CABI)
http://www.cabi.org/

ChemIDplus Database
http://sis.nlm.nih.gov/chemical.html

ChemSpider
http://www.chemspider.com/

Cytoscape - Open Source Bioinformatics Platform for Network Analysis and Visualization
http://cytoscape.org/

DNA From the Beginning
http://dnaftb.org/

eHealthcareBot Search Engine
http://www.eHealthcareBot.com/

Encyclopedia of DNA Elements (ENCODE)
http://www.encodeproject.org/ENCODE/

ePosters.net: The Online Journal of Scientific Posters
http://www.eposters.net/

European Bioinformatics Institute (EBI)
http://www.ebi.ac.uk/Information/

GeneEd: Genetics, Education, Discovery
http://geneed.nlm.nih.gov/index.php

Gene Expression
http://www.cognizantcommunication.com/filecabinet/Gene/gene.htm

Gene Ontology™ (GO) Consortium
http://www.geneontology.org/

Genetic Engineering and Biotechnology Journal (GEBJ)
http://astonjournals.com/gebj.html

Genome Gateway
http://www.nature.com/genomics

Genomic Medicine
http://www.springer.com/biomed/journal/11568

Genomics Glossaries & Taxonomies
http://www.genomicglossaries.com/

GoPubMed.org - Life-Science Search Engine
http://www.GoPubMed.org/

HFSP Journal - Frontiers of Interdisciplinary Research in the Life Sciences
http://hfspj.aip.org/

Human Genome Project Education Resources
http://www.ornl.gov/sci/techresources/Human_Genome/education/education.shtml

InfoBionics - Flexible Data Mining Applications
http://www.infobionics.com/

Interactive Biology - Making Biology Fun
http://www.interactive-biology.com/

International Cancer Genome Consortium (ICGC)
http://www.icgc.org/

International Journal of Agricultural and Biological Engineering (IJABE)
http://www.ijabe.org/index.php/ijabe

International Journal Bioautomation
http://www.clbme.bas.bg/bioautomation/

International Journal of Bioinformatics Research and Applications (IJBRA)
http://www.inderscience.com/ijbra

International Journal of Biological Sciences and Technology (IJBLST)
http://www.ijblst.org/

International Journal of Biomedical Science (IJBS)
http://www.ijbs.org/HomePage.aspx

International Journal of Biometric and Bioinformatics (IJBB)
http://cscjournals.org/description.php?Jcode=IJBB

International Journal of Healthcare Information Systems and Informatics (IJHISI)
http://www.igi-global.com/journals/details.asp?id=4835

Journal of Biomedical Sciences and Research (JBSR)
http://www.jbsr.pharmainfo.in/

Journal of Biomedical Semantics
http://www.jbiomedsem.com/

Journal of Biomedicine and Biotechnology
http://www.hindawi.com/journals/jbb/

Journal of Visualized Experiments (JoVE) - Biological Research in a Video Format
http://www.jove.com/index/Main.stp

Kaggle - Data Mining, Forecasting and BioInformatics Competitions
http://kaggle.com/

LabGuru - Innovative Online Research Management Resource
http://www.labguru.com/

LeadDiscovery - Dedicated to Drug Discovery
http://www.leaddiscovery.co.uk/

mBio
http://mbio.asm.org/

MEDIE - Intelligent Search Engine for Biomedical Correlations
http://www-tsujii.is.s.u-tokyo.ac.jp/medie/

Microsoft Biology Tools (MBT)
http://research.microsoft.com/en-US/projects/bio/mbt.aspx#MSR-Biology-Ext

MolecularStation
http://www.molecularstation.com/

nanoHUB - Simulation, Education and Community for Nanotechnology
https://www.nanohub.org/

National Biological Information Infrastructure (NBII)
http://www.nbii.gov/

Nature RSS Newsfeeds
http://www.nature.com/rss

NBII Metadata Clearinghouse
http://metadata.nbii.gov/clearinghouse/

NuGO Bioethics Guidelines Tool
http://nugo.dife.de/bot/index.php

Open Bioinformatics Journal
http://bentham.org/open/tobioij/

Open Biomedical Ontologies (OBO)
http://obo.sourceforge.net/

OReFiL: Online Resource Finder for Lifesciences
http://orefil.dbcls.jp/index.cgi

Patent Lens™ - Patent Informatics and Analysis Component of the BIOS Initiative
http://www.bios.net/daisy/bios/50

Personal Genome Project (PGP)
http://www.personalgenomes.org/

PhysioBank
http://www.physionet.org/physiobank/

PhysioNet - Research Resource for Complex Physiologic Signals
http://www.physionet.org/

Plant Products Research Journal
http://www.ajol.info/journal_index.php?jid=254

Protocol Online - Your Lab's Reference Book
http://www.protocol-online.org/

Pubget - Search Across BioMedicine PDFs
http://pubget.com/

Public Data Sets on AWS
http://aws.amazon.com/publicdatasets/

R&D Chemicals - Chemical Compounds Database
http://www.rdchemicals.com/

Reflect: Automated Annotation of Scientific Terms of Proteins and Small Molecules
http://reflect.ws/

ResearchGATE - Professional Network for Scientists
https://www.researchgate.net/

Resource Informagen™ - Biotech Company Directories
http://informagen.com/Directories/Biotech.php

Resources for Bioinformatics
http://www2.lib.udel.edu/subj/bioinformatics/index.htm

Scientist Solutions - International Life Science Community
http://www.scientistsolutions.com/

SciFeeds - Life Science Journal RSS Feeds and Social Network
http://www.scifeeds.com/

Scitable - A Collaborative Learning Space for Life Sciences
http://www.nature.com/scitable

ScratchPads - Research Community Working On the Web
http://www.editwebrevisions.info/scratchpads

SHIRAZ Project
http://shiraz.ist.psu.edu/

South African National Bioinformatics Institute
http://www.sanbi.ac.za/

Telomerase Database
http://telomerase.asu.edu/

The TAMBIS Project
http://img.cs.man.ac.uk/tambis/index.html

Tranche Project - Secure P2P for the Scientific Community
http://tranche.proteomecommons.org/

Transcriptic - Let Their Robots Do Your Life Science
https://www.transcriptic.com/

uBio - Indexing and Organizing 11,106,374 Biological Names
http://www.ubio.org/

VADLO - BioMedical and Life Sciences Search Engine
http://vadlo.com/

Visual Medical Dictionary
http://www.curehunter.com/public/dictionary.do

Vivisimo Bio Meta Cluster
http://demos.vivisimo.com/projects/BioMed

XTractor - Discovering Newer Scientific Relations Across Abstracts
http://www.xtractor.in/



HEALTH INFORMATICS (Medical Informatics)

American Medical Informatics Association (AMIA)
http://www.amia.org/

Authoratory - Database of Leading PubMed Scientists
http://www.authoratory.com/

Biomedical Digital Libraries
http://www.bio-diglib.com/

Biomedical Informatics Research Network
http://www.nbirn.net/

Biomedical LIterature (and text)Mining Publications (BLIMP)
http://blimp.cs.queensu.ca/

Biomedical Research Web Directory
http://www.biores.org/

CureHunter - Medical Search and Discovery
http://www.CureHunter.com/

Electronic Journal of Health Informatics (eJHI)
http://ejhi.net/ojs/index.php/ejhi

Encyclopedia of Biomaterials and Biomedical Engineering
http://www.dekker.com/servlet/product/productid/E-EBBE

Framingham SNP Health Association Resource (SHARe)
http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?id=phs000007

Health Informatics Forum - Discussion Forum for Health Informatics
Professionals and Students

http://www.healthinformaticsforum.com/

International Journal of Biomedical Sciences (IJBS)
http://www.ijbs.org/

International Journal of Medical Microbiology
http://www.sciencedirect.com/science/journal/14384221

JMIR : Journal of Medical Internet Research
http://www.jmir.org/

Journal of Medicine and Biomedical Research
http://www.bioline.org.br/jm

MedBioWorld™
http://www.sciencekomm.at/

novoseek - Search Engine for BioMedical Literature in Medline
http://www.novoseek.com/

Open Biomarkers Journal
http://www.bentham.org/open/tobiomj/

OpenClinica - Clinical Research Studies Software
http://www.openclinica.org/

Open Directory - Health: Medicine: Informatics
http://www.newhoo.com/Health/Medicine/Informatics/

openEHR
http://www.openehr.org/

Open-i Project - An Open Access Biomedial Image Search Engine
http://openi.nlm.nih.gov/

RIKEN Center for Genomic Medicine
http://www.src.riken.jp/english/

Search Medical Algorithms
http://www.medal.org/



NEUROINFORMATICS (NI)

fMRI Data Center
http://www.fmridc.org/

Human Brain Project
http://www.nimh.nih.gov/neuroinformatics/index.cfm

Institute of Neuroinformatics
http://www.ini.unizh.ch/

International Neuroinformatics Coordinating Facility (INCF)
http://www.incf.org/

National Ecological Observatory Network (NEON)
http://www.neoninc.org/

Neuroinformatics Journal
http://www.ovid.com/site/catalog/Journal/1663.jsp

NIH Guide: The Human Brain Project (Neuroinformatics): Phase I - Feasibility; Phase II - Refinements, Maintenance and Integration
http://grants1.nih.gov/grants/guide/pa-files/PAR-03-035.html

Resources for Neuroinformatics Researchers
http://snipurl.com/6pgeu

SenseLab
http://senselab.med.yale.edu/senselab/

SIGMA: Large Scale Machine Learning Toolkit
http://research.microsoft.com/en-us/projects/sigma/




BIODIVERSITY INFORMATICS (BDI)

Biodiversity and Biological Collections Databases
http://www.biocollections.org/

Biodiversity Informatics Peer Reviewed Open Access Journal
http://jbi.nhm.ku.edu/index.php

Chemistry & Biodiversity
http://www3.interscience.wiley.com/journal/106056929/home?CRETRY=1&SRETRY=0

Global Biodiversity Information Facility
http://www.gbif.org/

GRAIN - Agricultural Biodiversity
http://www.grain.org/

KU BRC Informatics
http://www.specifysoftware.org/Informatics

Open Directory - Science: Environment: Biodiversity: Informatics
http://www.newhoo.com/Science/Environment/Biodiversity/Informatics/

Overview of Biodiversity Informatics
http://www.calacademy.org/research/informatics/sblum/pub/biodiv_informatics.html

Quick Guide to Biodiversity Informatics
http://www.iabin.net/Biodiversity.htm

Systematics and Biodiversity
http://journals.cambridge.org/action/displayJournal?jid=SYS



BIOMOLECULAR INFORMATICS (BioInformatics)

AANT : Amino Acid-Nucleotide Interaction Database
http://aant.icmb.utexas.edu/

ACLAME : A Classification of Mobile Genetic Elements
http://aclame.ulb.ac.be/

ActionBioscience.org
http://www.actionbioscience.org/index.html

AddGene - Better Way to Share Plasmids
http://www.addgene.org/

Advances in Bioinformatics
http://www.hindawi.com/journals/abi/

Algorithms for Molecular Biology
http://www.almob.org/

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
http://www3.interscience.wiley.com/cgi-bin/jhome/99018626

Ares Lab Yeast Intron Database
http://www.cse.ucsc.edu/research/compbio/yeast_introns.html

ASAP : Alternative Splicing Annotation Project
http://www.bioinformatics.ucla.edu/ASAP

ASC: Active Sequence Collection
http://bioinformatica.isa.cnr.it/ASC/

ASDB : Alternative Splicing Database [LBL]
http://hazelton.lbl.gov/~teplitski/alt/

ASD : EMBL Alternative Splicing Database Project
http://www.ebi.ac.uk/asd

BELIT - Bioethics Literature Database
http://www.drze.de/BELIT

BioBank
http://www.gabiobank.org/

Biocompare - Buyer's Guide for Life Scientists
http://www.biocompare.com/index.asp

Bioenergy Research
http://www.biopress.dk/FiB-UK.htm

BioForge - Community for Biological Innovation
http://www.cambia.org/daisy/cambia/4272

BioGRID
http://www.thebiogrid.org/

Bioinformatics and Biology Insights
http://www.la-press.com/journals.php?pa=home&journal_id=39

Bioinformatics
http://informagen.com/Bioinformatics.php

Bioinformatics.Net
http://www.bioinformatics.net/

BioInformatics.org
http://www.BioInformatics.org/

Bioinformatics Databases and Tools Guide
http://www.agr.kuleuven.ac.be/vakken/i287/bioinformatica.htm

BioInformatics Links
http://www.ii.uib.no/~inge/list.html

BioInformatics Tools
http://www.ornl.gov/sci/techresources/Human_Genome/posters/chromosome/tools.shtml
http://www.ncbi.nlm.nih.gov/Tools/

Bioinformatics - UCSC Science & Engineering Library Subject Guides
http://library.ucsc.edu/science/subjects/bioinformatics/

Bioinformatic Workflow Builder Interface
http://www.alphaworks.ibm.com/tech/biowbi

Bioinformatik
http://www.bioinformatik.de/

Bioinformation
http://www.bioinformation.net/

Biointerphases: An Open Access Journal for the Biomaterials Interface Community
http://biointerphases.org/

Bioknoppix
http://bioknoppix.hpcf.upr.edu/

Biological Knowledge
http://www.biologicalknowledge.com/

Biological Theory: Integrating Development, Evolution, and Cognition
http://mitpressjournals.org/biot

Biology Direct
http://www.biology-direct.com/

Biomacromolecules
http://pubs.acs.org/journals/bomaf6/index.html

Bio Mapping
http://biomapping.net/

Biomarker Insights
http://www.la-press.com/bmi.htm

BioMed Central
http://www.biomedcentral.com/

Biometric Technology Today
http://www.sciencedirect.com/science/journal/09694765

BioMolecular Engineering Research Institute (BMERC)
http://bmerc-www.bu.edu/

BioNanomatrix, Inc (BNM)
http://www.bionanomatrix.com/

BIONLP.ORG - Natural Language Processing of Biology Text
http://www.ccs.neu.edu/home/futrelle/bionlp/

BioRuby
http://bioruby.org/

Biotechnology Journal (BTJ)
http://www3.interscience.wiley.com/cgi-bin/jhome/110544531

Biotechnology Resources
http://www.BiotechnologyResources.info/

BioWizard - The Biomedical Research Portal
http://www.biowizard.com/

BLAST UTR db: Untranslated Regions Database
http://www.ba.itb.cnr.it/BIG/Blast/BlastUTR.html

Briefings in Functional Genomics and Proteomics
http://bfgp.oxfordjournals.org/

BSML - Bioinformatics Sequence Markup Language
http://xml.coverpages.org/bsml.html

Cambridge Crystallographic Data Centre
http://www.ccdc.cam.ac.uk/

CAMERA (Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis)
http://camera.calit2.net/

Cancer Genome Atlas
http://cancergenome.nih.gov/index.asp

Cancer Genomics Publications Data Sets
http://www.broad.mit.edu/cgi-bin/cancer/datasets.cgi

Cell Biochemistry and Biophysics (CBB)
http://www.springer.com/humana+press/biochemistry/journal/12013

Cell Division
http://www.celldiv.com/

Centre for Molecular and Biomolecular Informatics
http://www.cmbi.kun.nl/index.html

Chemical Biology & Drug Design
http://www.blackwellpublishing.com/journal.asp?ref=1747-0277&site=1

Clinical Bioinformatics Ontology™ (CBO)
https://www.clinbioinformatics.org/

Complete Genomics (CGI)
http://completegenomics.com/

Computational Biology and Chemistry
http://www.sciencedirect.com/science/journal/14769271

Connectivity Map - Connecting Diseases, Genes and Drugs
http://www.broad.mit.edu/genome_bio/connectivitymap.html

CorePsych - Brain and Body Connections
http://CorePsychBlog.com/

CORG : A Database for COmparative Regulatory Genomics
http://corg.molgen.mpg.de/

CSH Protocols
http://www.cshprotocols.org/

CUTG : Codon Usage Tabulated from GenBank
http://www.kazusa.or.jp/codon

Data Mining Resources
http://www.DataMiningResources.info/

dbGaP - Database of Genotype and Phenotype
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gap

Developmental Cell
http://www.developmentalcell.com/

DiscoveR8 - Life Sciences News, Discoveries, Hypotheses and Procedures
http://www.discover8.com/

DNA Research
http://dnaresearch.oxfordjournals.org/

DrugBank Database
http://redpoll.pharmacy.ualberta.ca/drugbank/

EBI and Ghent University Launch PRIDE: An Open Source Database Of Protein
Identifications

http://www.innovations-report.com/html/reports/life_sciences/report-48290.html

EID : The Exon-Intron Database of Protein-Coding Intron-Containing Genes
http://www.mco.edu/bioinfo/eid/index.html

EMBL SMART : Simple Modular Architecture Research Tool (for Proteins)
http://smart.embl.de/

Encyclopedia Of DNA Elements - ENCODE
http://www.genome.gov/10005107

Encyclopedia of Medical Genomics and Proteomics
http://www.dekker.com/servlet/product/productid/E-EDGP

Entrez - The Life Sciences Cross-Database Search Engine
http://www.ncbi.nlm.nih.gov/Entrez/index.html

Environmental Bioindicators
http://www.tandf.co.uk/journals/titles/15555275.asp

European Bioinformatics Institute
http://www.ebi.ac.uk/

European Bioinformatics Institute: Research Groups
http://www.ebi.ac.uk/Groups/

Evolutionary Bioinformatics Online (EBO)
http://www.la-press.com/evolbio.htm

Evolutionary Intelligence
http://www.neuroblast.net/EI/EI.html

ExInt: an Exon Intron Database
http://sege.ntu.edu.sg/wester/exint

Functional Glycomics Gateway
http://www.functionalglycomics.org/

Genamics SoftwareSeek
http://genamics.com/software/

Genetic Science Learning Center
http://gslc.genetics.utah.edu/

Genographic Project
http://www3.nationalgeographic.com/genographic/

Genome Bioinformatics - UCSC
http://genome.ucsc.edu/

Genome Biology and Evolution
http://gbe.oxfordjournals.org/

Genome Browsers
http://zillman.blogspot.com/2004/03/genome-browsers.html

Genome Tools
http://cmr.tigr.org/tigr-scripts/CMR/shared/Menu.cgi?menu=genome

Genome-Tools
http://freshmeat.net/projects/genome-tools/?branch_id=46085&release_id=183048

Genomics, Proteomics & Bioinformatics
http://www.sciencedirect.com/science/journal/16720229

GenScript - Your One Stop Wet Lab for Biology
http://www.genscript.com/

Go3R - Knowledge Based Semantic Search Engine To Avoid Animal Experiments
http://www.go3r.org/

GoPubMed - Ontology-based Literature Search
http://www.gopubmed.com/

Guide to Selected Bioinformatics Internet Resources
http://www.istl.org/02-winter/internet.html

GUS - The Genomics Unified Schema
http://www.gusdb.org/

GVSS - Grid Virtual Screening Service
http://gvss2.twgrid.org/

HapMap Project - Identify and Catalog Genetic Similarities and Differences in Human Beings
http://www.hapmap.org/

H-Invitational Database (H-Inv DB)
http://www.h-invitational.jp/

HS3D - Homo Sapiens Splice Sites Dataset
http://www.sci.unisannio.it/docenti/rampone

Human Genome Project Information
http://www.ornl.gov/TechResources/Human_Genome/home.html

Human Genomics and Proteomics
http://www.sage-hindawi.com/journals/hgp/

Human Genre Project
http://www.humangenreproject.com/index.php

Immunome Research
http://www.immunome-research.com/

International Journal of Data Mining and Bioinformatics (IJDMB)
http://www.inderscience.com/ijdmb

International Journal of Human Genetics
http://www.krepublishers.com/02-Journals/IJHG/IJHG-00-0-000-000-2001-Web/IJHG-00-0-000-000-2001-1-Cover.htm

Internet Resources for Bioinformatics
http://www2.lib.udel.edu/subj/bioinformatics/internet.htm

Invertebrate Biology
http://www.blackwellpublishing.com/journal.asp?ref=1077-8306&site=1

isainfrastructure - Investigation/Study/Assay
http://isa-tools.org/

Islander : Prophages Incorporated into Bacterial Genomes
http://www.indiana.edu/~islander

JCVI Cloud BioLinux
http://www.jcvi.org/cms/research/projects/jcvi-cloud-biolinux/

Journal of Biological Chemistry
http://www.jbc.org/

Journal of Biomaterials Science, Polymer Edition
http://www.ingentaconnect.com/content/vsp/bsp

Journal of Cell and Molecular Biology
http://jcmb.halic.edu.tr/

Journal of Genetics
http://www.ias.ac.in/jgenet/

Journal of Molecular Histology
http://www.springerlink.com/content/111649/

Journal of Molecular Signaling
http://www.jmolecularsignaling.com/home/

Journal of Pharmacy and Bioresources (JPB)
http://www.ajol.info/journal_index.php?jid=218

Journal of Proteomics & Bioinformatics (JPB)
http://www.omicsonline.com/JPBhome.htm

Journal of Proteome Research
http://pubs.acs.org/journals/jprobs/index.html

KEGG: Kyoto Encyclopedia of Genes and Genomes
http://www.genome.ad.jp/kegg/

LabOnWeb by Compugen
http://www.labonweb.com/

Lawrence Berkeley National Laboratory: VISTA
http://www-gsd.lbl.gov/VISTA/index.shtml

Macromolecular Bioscience
http://www3.interscience.wiley.com/cgi-bin/jhome/77002860

MedScan - Automated Scientific Text Mining Tool
http://www.ariadnegenomics.com/products/medscan.html

MeshPubMed - Ontology-based Literature Search
http://www.meshpubmed.com/

MetaBasis: Web Based Database for Bioinformatics Tools
http://metabasis.bioacademy.gr/

MetaDB: A Metadatabase for the Biological Sciences
http://www.neurotransmitter.net/metadb/metadb.php

MethDB : DNA Methylation Database
http://www.methdb.de/

MICdb : Prokaryotic Microsatellites Database
http://210.212.212.7/MIC

Microbes - Microbiology Microbes Bacteria Information and Links
http://www.microbes.info/

Microbial Genome Sequencing Program
http://www.nsf.gov/pubs/2008/nsf08511/nsf08511.htm

Microbiology (Moscow)
http://www.springerlink.com/content/1608-3237/

MIX - Meta-analysis with Interactive eXplanations
http://www.mix-for-meta-analysis.info/

Molecular and Cellular Proteomics (MCP)
http://www.mcponline.org/

Molecular Biology Database Collection : 2004 Update [Nucleic Acids Research]
http://www.nar.oupjournals.org/cgi/content/full/32/suppl_1/D3/DC1

Molecular Biology Protocols and Bioinformatics
http://www.molecularstation.com/

Molecular Biology Resources
http://www.biol.sc.edu/molbiol.html

Molecular BioSystems
http://www.rsc.org/Publishing/Journals/mb/index.asp

Molecular Cytogenetics
http://www.molecularcytogenetics.org/

Molecular Genetics, Microbiology and Virology
http://www.springerlink.com/content/120674/

Molecular Informatics Resource for the Analysis of Gene Expression (MIRAGE)
http://www.geisr.com/

Molecular Plant-Microbe Interactions (MPMI)
http://www.apsnet.org/mpmi/top.asp

National Center for BioTechnology Information (NCBI)
http://www.ncbi.nlm.nih.gov/

Nature Methods
http://www.nature.com/nmeth/index.html

Neurochemical Journal
http://www.springerlink.com/content/120580/

Neuron Glia Biology
http://journals.cambridge.org/action/displayJournal?jid=NGB

Neuroscience Database Gateway (NDG) - A Gateway to Neuroscience Resources on the Web
http://ndg.sfn.org/

Neurotransmitter - Biomedical Information in Neuroscience, Pharmacology and Psychology
http://www.neurotransmitter.net/

NHGRI Policy and Legislation Database
http://www.genome.gov/LegislativeDatabase

NodalPoint.org - A BioInformatic Weblog
http://www.nodalpoint.org/index.php

OBBeC Magazine
http://obbec.com/

Oligonucleotides
http://www.liebertonline.com/loi/oli

OMIM - Online Mendelian Inheritance in Man
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM

Oncogenomics Normal Tissue Database
http://ntddb.abcc.ncifcrf.gov/cgi-bin/nltissue.pl

OpenClinica: Professional Open Source Solutions for the Clinical Research Enterprise
http://www.openclinica.org/

PharmGKB: The Pharmacogenetics and Pharmacogenomics Knowledge Base
http://www.pharmgkb.org/

PhenX Toolkit
https://www.phenxtoolkit.org/

Pleiades Promoter Project
http://www.pleiades.org/index.php

Postgenomic - Life Science Blog Aggregator
http://www.postgenomic.com/

PPAR Research
http://www.hindawi.com/GetJournal.aspx?journal=PPAR

Project Ensembl
http://www.ensembl.org/

ProteinDBS
http://proteindbs.rnet.missouri.edu/

Protein Journal
http://www.springerlink.com/content/111872/

ProteinScience.com - The Proteomics Portal™
http://www.proteinscience.com/index.htm

Proteome BioKnowledge® Library
http://www.proteome.com/

Proteomics
http://www3.interscience.wiley.com/cgi-bin/jhome/76510741

PROWL
http://prowl.rockefeller.edu

RECODE : Database of Translational Recoding Events
http://recode.genetics.utah.edu/

Registry of Standard Biological Parts
http://parts.mit.edu/

Russian Journal of Genetics
http://www.springerlink.com/content/1608-3369/

Scalable Molecular Dynamics (NAMD)
http://www.ks.uiuc.edu/Research/namd/

Selected Web Sites of Interest to Kineticists, Modelers, Computational Biologists, Theoretical Biologists and Bioinformaticians
http://snipurl.com/cbp2

Signals - Online Magazine of BioTechnology Industry Analysis
http://www.signalsmag.com/

Silencing Genomes
http://www.silencinggenomes.org/

S/MARt DB
http://smartdb.bioinf.med.uni-goettingen.de/

Source Code for Biology and Medicine
http://www.scfbm.org/

STRBase : Short Tandem Repeat DNA Internet Database
http://www.cstl.nist.gov/div831/strbase

Structural Genomics Knowledgebase
http://kb.psi-structuralgenomics.org/index.html

Synapse
http://www3.interscience.wiley.com/cgi-bin/jhome/36341

Talking Glossary of Genetic Terms
http://www.genome.gov/glossary.cfm

Textpresso
http://www.textpresso.org/

The Bioinformatics Resource
http://www3.genet.sickkids.on.ca/bioinfo_resources/

The Genetic Codes
http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi?mode=c

The Intronerator
http://hgwdev-hiram.cse.ucsc.edu/IntronWS120/index.html

The PubChem Project
http://pubchem.ncbi.nlm.nih.gov/

The TAMBIS Project
http://img.cs.man.ac.uk/tambis/index.html

The Wellcome Trust Sanger Institute
http://www.sanger.ac.uk/

ToPNet (Protein Topology Calculation Software)
http://networks.gersteinlab.org/

Transinsight - Intelligent Search Technologies for the Life Sciences
http://www.transinsight.com/

Translational OncoGenomics
http://www.la-press.com/tog.htm

Transmembrane Structure Prediction Servers
http://split.pmfst.hr/split/4/others.html

TranspoGene Server
http://transpogene.tau.ac.il/

Transterm : RNA Sequences and their Associated Motifs
http://uther.otago.ac.nz/transterm.html

Tree of Life Web Project (ToL)
http://tolweb.org/

Tripos Discovery Informatics
http://www.tripos.com/

Tsinghua University-Institute of Bioinformatics: DBSubLoc
http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html

UCSC Genome Bioinformatics
http://genome.ucsc.edu/

UTR Home Page : Resources for Sequence Analysis of 5' and 3' Untranslated Regions
http://bighost.area.ba.cnr.it/BIG/UTRHome/

Virginia Bioinformatics Institute (VBI) Microbial Database
http://phytophthora.vbi.vt.edu/

Vector dB
http://seq.yeastgenome.org/vectordb/

Visual Complexity
http://www.visualcomplexity.com/

Web Service for Bioinformatic Analysis Workflow (WsBAW)
http://www.alphaworks.ibm.com/tech/wsbaw

YSearch - Public Y-DNA Database
http://www.ysearch.org/



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©2013 Marcus P. Zillman, M.S., A.M.H.A.

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